Hi, I got eye on it.
Compile to 2 LE so a lot of design error can be on it or I am wrong , I don't use schematic nor Cyclone IV so may be some setting where lost on conversion.
When you have your lecturer again on lab, show the link I sent to you, may be it find more useful than try use Quartus in Archaic mode.
BCD Counter still have trouble, ripple counter clock are to be avoided on FPGA, enable is missing and also next counter has to increment from 9 to 0 transition not from 0 to 1.
BCD decoder has more sense on output multiplexer than on every digit, this is not a big issue. Just use one at output where you drive multiplexed display.
Note: may be synthesis do it for you, but you have to learn good practice.
An LED display don't like to be driven @50/4-> 12.5MHz so reduce to a reasonable frequency, scale clock to 10KHz or less.
I see you didn't grasped enough logic design, try use DEEDS I suggested, you can single step clock and see every point of the circuit probing level or display value all in real time. This is targeted to learn digital design @college and high school too.
Tool export design to Altera Quartus and selected board, enjoy it.
Your design required 44 second to compile, I fear on a non Linux or MAC took some minutes so this waste a lot of time.
Sorry I cannot debug your homework, you need use a good textbook, if still available at Logic gate time I adopted Floyd Digital design, old book
https://www.amazon.com/Digital-Fundamentals-Global-FLOYD-THOMAS/dp/1292075988/ref=dp_ob_title_bk
If you are at college course Deeds book is more close:
https://www.amazon.com/Introduction-Digital-Systems-Giuliano-Donzellini-ebook/dp/B07GTDDVF8/ref=sr_1_fkmrnull_1?keywords=ISBN+978-3-319-92804-3&qid=1556360656&s=gateway&sr=8-1-fkmrnull
browse college site and subscribe to, you may get more help than where we are busy with deadline of release project.
Regards.