Hi,
The actual guidance is "When you use the GTS System PLL Clocks IP, it must always connect to the GTS PMA/FEC Direct PHY IP or protocol IPs." Essentially meaning that C0 port of the IP must be connected to logic and cannot be left unconnected.
When “Use case of System PLL” is set to “FABRIC_USE_CASE”, by default C0 output is enabled for fabric use. If you need another output driving the fabric, you have to set "Output frequency C1 enable" to "On".
To determine the output frequency of C1, use the drop-down menu in the IP. The options depends on the input refclk frequency that you set. Internally, the VCO frequency is calculated based on both input and both the output clock requirements and a range of available drop-down values is restricted due to multiplication and division factors possible.
Regards