Hi,
"Is there any reason why the transmitted clock should be modified depending on data content in the sender?"
We are working with the IC vendor to understand that.
"What is the primary problem, do you experience data corruption?"
As i mentioned, we do not see any data corruption in practice. The issue is that the jitter on this clock does not meet the IO PLL cycle to cycle jitter requirements and we would like to understand if we might have some robustness issue here.
unfortunately, such a major design change like using CDR is not an option right now.