You can try running the built in test ..
I took this from the user guide and have been impressed with the BTS on the Stratix-V board I had
I agree with DWH .. its not the end of the world ... just an opportunity to learn.
I don't have the schematic but the red led I saw in the user documentation I do have was off the MAX system controller.
I will check the schematic ... can you give us a clue where you were probing ... generally I/O's are somewhat forgiving and a bad I/O can
easily be substituted for a good one ... if there are higher voltages involved say + or - 12 VDC then that could do some serious damage.
Best Regards, Bob.
.... "The kit includes an application called the Board Test System (BTS). The BTS provides
an easy-to-use interface to alter functional settings and observe the results. You can
use the BTS to test board components, modify functional parameters, observe
performance, and measure power usage. While using the BTS, you reconfigure the
FPGA several times with test designs specific to the functionality you are testing. (You
can also use the BTS as a reference source for designing systems.)
To install the BTS, follow the steps in “Installing the Development Kit” on page 3–1. ..."