I was never able to ferret the pin-assignment details from the Altera docs, but a co-worker did so: here is an example of embedding pin assignments in Verilog code:
//System
input SYNC_IN /* synthesis altera_chip_pin_lc = "5"*/;
output SYNC_OUT /* synthesis altera_chip_pin_lc = "39"*/;
input SW_2 /* synthesis altera_chip_pin_lc = "18"*/;
input SW_1 /* synthesis altera_chip_pin_lc = "21"*/;
output LED1 /* synthesis altera_chip_pin_lc = "37"*/;
output LED2 /* synthesis altera_chip_pin_lc = "22"*/;
//SRAM
inout [15:0] SR_DTA /* synthesis altera_chip_pin_lc = "218,226,230,231,232,233,234,235,188,189,194,195,196,197,200,201"*/;
output SR_OEN /* synthesis altera_chip_pin_lc = "219"*/;
output SR_WEN /* synthesis altera_chip_pin_lc = "187"*/;
output SR_CEN /* synthesis altera_chip_pin_lc = "202"*/;
output [18:0] SR_ADR /* synthesis altera_chip_pin_lc = "236,224,223,221,237,238,239,240,4,182,183,184,185,186,203,217,216,214,207"*/;
Wade Hassler