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What you can do is have a quartus gui opened in any computer. Then project -> archive project -> try to include the files the relative path and archive it.
After that, from they, you should see the command that is being used in the Quartus itself and you can copy and make used of it.
How, exactly, do I "try to include the files the relative path"?
I don't see an option to do this...
All the files that I can see in the "add" requester, have relative paths.
When I add a custom file, then I get a command line which uses "arc_file_list_temp.tmp.txt", which, presumably lists all files.
It has absolute paths for the files that I explicitly selected and relative paths for the files that Quartus knows to include in the archive.
Info: Command: quartus_sh --archive -revision top -output /home/oyvind/Desktop/ascenium_restored/top_19_3_0_222.qar -use_file_set custom -input /home/oyvind/Desktop/ascenium_restored/arc_file_list_temp.tmp.txt -use_file_subset qsf -use_file_subset auto top