Connecting nodes without wires

Note that this Find is not a function for finding what a net is connected to, it just Finds where that text exists in the design. Now if it finds one connection and not the other, then maybe something has changed the name of the other instance(I don't know if you have Find Whole Words Only on, but if you do, then maybe there is an extra character before or after the name, like a period or something...) Anyway, it's text isn't matching what you're looking for where another location is. Maybe delete the net, redraw and rename it, and check again. (Note that you can also go the Tools -> Netlist Viewers -> RTL viewer as another way to look at how the schemtatic is being interpreted. This probably isn't what you want, but just a suggestion...)