Linux doesn't make use of the IORD and IOWR commands that Altera defines. So you won't find any examples of those.
What I would recommend would be to take a look at some of the freebie sites with information on how to write device drivers. That's usually a good starting point.
For instance, I learned how to write my first modular driver using:
http://lwn.net/articles/driver-porting/ (
http://lwn.net/articles/driver-porting/)
A few mods have to be made to some of the Makefile examples but all in all it worked pretty well.
A few things to note:
(1) any type of kernel work (device drivers, making mod's to the kernel, etc). cannot be performed from within Eclipse. It needs to be done from the commandline (Nios II SDK Shell)
(2) the kernel source code can be found at $KERNEL_PLUGIN/linux-2.6.x
(3) your kernel build directory can be found at $ECLIPSE_WORKSPACE/<project>/build
Hope this helps...