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Skimming altera_avalon_tse.c, it's not immediately obvious how to exactly accomplish it, but it looks like you want to declare your own instance of 'alt_tse_system_phy' with your own 'tse_phy_cfg' function, and register that via alt_tse_system_add_sys().
Search altera_avalon_tse.c for that printf "MDIO not enabled! Speed = " and you'll find the if() else() clause where the existing software would have liked to run your user-supplied function tse_phy_cfg().
Good luck.
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This I also had in mind, but it is not the ideal solution cause I have to touch BSP files --> can create problems later the BSP gets regenerated with a later release of stack. I was hoping for a non-intrusive way, but seems there's no such way... I'll go with it then.
Thanks!
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