Running separate C code on separate core in NIOS Multi-core system

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or i have options from Eclipse SBT ??

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The "Philosopher" tutorial ( http://www.altera.com/literature/tt/tt_nios2_multiprocessor_tutorial.pdf ) walks you through debugging the software from within Eclipse.

On page 1-33, the section titled "Debugging the Applications in the NIOS II SBT for Eclipse"