Yep, solved that problem with a fix on pin assignments, but on to the next problem unfortunately.
When trying to write to our Flash now, we are getting a file size too large. There should be no reason that a 4M flash run out of memory on a simple Hello LED program. The FPGA configuration file is where it is saying it is too large, but the configuration we are using for the FPGA is a slightly modified version of one that came in the demonstration files. Our Base address starts at 0x00000000 and goes to 0x003FFFFF which is 4M. Any ideas would be helpful.
THANKS!