NIOS Software appears to restart

I think I've figured out what is going on, but I'm not sure how to fix it.

I took my original design, copied it to a different place on the system and started using it. For some reason, even though I pointed to the eclipse workspace in the new directory, when I look at the path, it points to the old one. So, what is happening is that the bsp file isn't matched up. I just created a new hello world project from scratch and am trying to use this as a starting point. Once I have this set up, I can copy my working software set into the directory and hopefully it will work.

I went through the process to create a new project using the hello world template, pointed it to the correct SOPCINFO file, and compile it. The problem I'm now running into is that there isn't a run configuration. I go to set up a run configuration, but there is no ELF file. I browse for an ELF file and find nothing. I've cleaned and rebuilt the project. Any thoughts on next steps?