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1> I would like to transfer the binary file from a remote processor to be flashed on my EPCS device through UART..In order to do this is there a standard code for sending and receiving the binary file...
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I don't think so, it is up to you to receive the binary file and write it to flash.
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2>after receiving the binary file(i.e the application to be flashed after the SOF hardware image offset on the flash) how do i find the end of SOF image on my flash so that i can start flashing my application after SOF..
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I think you mean POF file, this is what is programmed into flash. The remote update image does not have to be immediately after the factory image, it can be in any arbitrary starting location in flash. You can look up the programming file size for the FPGA to determine how much space the factory image takes (always starting from offset 0x0 for EPCS) and just store your remote image somewhere above that.
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