Hi -
Apologies for my late reply here ('was' struggling to recover my pw).
We were unable to program the FPGA as it didn't appear to be getting far enough into boot to accept the programming. Additionally, after speaking a little more with the technician, he indicated the failure mode was different after replacing the IC. This now makes me believe we did not achieve a good "collapse" of the BGA when it was attached. The assembly went through the removal, re-ball, and reinstall process and is able to pass Boundary Scan now.
Thank you for your recommendations.
Best Regards.