Inconsistent fMax shown in report.html and final results

The Fmax values in the HTML are not "estimated" Fmax, they are "target" Fmax. i.e. the OpenCL compiler tries to balance pipeline stages (by inserting extra registers into the pipeline) and use variations of Intel IP Cores towards achieving that Fmax. The target Fmax by default is 240 MHz on Stratix V and Arria 10, and 480 MHz on Stratix 10. The two cases you are getting smaller values in the report are very likely cause by the compiler detecting a design critical path that will likely not meet timing for the target Fmax, and sacrificing Fmax to achieve a loop II one of; if that is the case, there should be a message in the report indicating this. There is no direct relationship between target Fmax in the report and post-place-and-route frequency; you can, however, increase the target Fmax to instruct the compiler to insert additional registers into the pipeline which might give you slightly higher post-place-and-route Fmax, but might also increase loop II if you increase it too far.