Hi Nurina,
I have this controller (https://www.criticallink.com/product/mitysom-5csx/ ) board on my project board and also I have this development kit with the same controller (https://www.criticallink.com/product/mitysom-5csx-dev-kit/).
I tried the Y13 pin with 100MHz for clock frequency. It is working now on the development kit and output is what I expected. However, when I download the same file on the controller itself, in the signal tap logic analyzer I am facing the status of "Waiting for Clock" strangely. In our project board, I powered the circuit with 5V and 3.3V to the corresponding pins. I am assuming the clock frequency is provided internally.
Do you have any idea about this issue?
Thanks,
Hassan