Need some help of SRunner Tools! Need some related files!

Thank you very much for replying!

Actually I'm doing some research for FPGA chip testing. I need to download the configuration file into the chip and get the inputs of the chip fixed on some specific values.(eg: there are five inputs of a circuit and these inputs are fixed on '10010') So I'm considering to edit the configuration files but I don't know whether I can achieve my purpose using tools provided by Altera. Is there any tool can be helpful?

Also, you mentioned the format is proprietary. Can I find it out by searching the patents?

Thanks again!