How to put an additional sub circuit to physically different locations in FPGA?

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You can use Logic Lock, design block reuse, and optionally partial reconfiguration to accomplish all of this. Look at Arria 10 or Cyclone 10 since these features (except for Logic Lock) require the Pro edition of the Quartus Prime software.

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Hello, thank you so much for your reply. I only have Cyclone V and Quartus Prime free (web) version. Is there any other ways to achieve that ?