The crash occurs when (eg) you auto-detect the Jtag chain.
This problem is latent and still there in Quartus 16.0.
So far, I had this problem on 5 different computers,
laptops or desktops.
It seems to be a regression in the Blaster driver and could be related
with motherboards with an AMD CPU.
I found 2 possible solutions :
1. The longest and probably cleanest way :
Remove ENTIRELY Quartus (stop the jtag service), remove the whole directory
and clean the registry (ccleaner).
Then re-install 16.0 from scratch, ending with the installation of the USB driver.
2. The fast easy way :
In the device manager remove/uninstall the Blaster driver.
Get a copy of the 13.1 drivers directory (\altera\13.1\quartus\drivers\usb-blaster)
Install manually this older driver.
It worked every time.
Hope this helps,
Bert