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Hello, I found out my problem.
I was not connecting nCS of EPCS properly.
Assigned it to "nCSO" in my top module, but passing "n_CSO" to the lower module.
I wonder why Quartus did not raise an error because "n_CSO" exists nowhere in my code...
It was bit tricky to find out, because configuration works totally fine.
I was not aware that the problem could be on my FPGA side.
Thanks,
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good one! we all also never aware something not right with the FPGa and we focus on the software only :D