Nios/e prints only in eclipse debug mode on jtag-uart, not in eclipse 'normal' mode

Since when is the jtag uart only for debug?

In quartus 10 and before i used it without almost any problem, in sopc builder.

Is that also the reason why the nios how has a special jtag debug mode pins.

These are new to me, and were not there in a nios in sopc builder AFAIK.

Does the clock frequencie also matters. I'm feeding it now with a 50 mhz clock.

Perhaps it need to be 20 mhz for the jtag only?