AFAIK the frequency is hardcoded in the controller and can't be changed. But the EPCS controller is nothing more than a SPI controller and a ROM containing the bootloader, so you can instead put your own SPI controller with the frequency you specify, put a custom bootloader in a on-chip ROM block and make the CPU boot from that ROM.
Read the EPCS datasheet though. With the normal read bytes command the maximum frequency is 20MHz. There is also a fast read command that can operate at up to 40MHz, but I don't know which one the standard bootloader uses.