An EPCS device is really just a SPI (serial) flash. So, the epcs_controller, in your SOPC Builder system, acts as a SPI master talking to the SPI slave (serial flash EPCS device).
Depending upon your device, the SPI signals are either connected automatically for you or you have to do it at the top-level of your design.
When connected automatically, you have to ensure that your Dual Purpose pins settings will allow the ASMI/SPI signals to function properly...which is what Jake was referring to.
Cheers, and Good luck!
- Ura