DE2 Board Tester?

Hi

I work at a university and we use DE2 boards and Quartus in our Digital Systems Labs. We have 30 DE2 boards that need to be tested. We'd like to test the output pins, LED's, and FPGA. We are using Quartus 9.1. I've been through the standard "Power on Test" procedure, but the professor wants a more thorough check. I was thinking about a bank of LED's to check the output pins, but I'm stuck on how to check the FPGA. Any help would be appreciated. Thanks