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when I power up the board I do not see any clock going into the design
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Do you mean there's no clock going to pin M9 or that your design doesn't do anything?
Assuming the latter - the 'set_location_assignment' is all you need to ensure your design knows where to source it's clock from. Arguably you should also tell Quartus what signalling standard of the clock (2.5V for this clock on this board), although not adding this won't stop it working.
I think it's more likely that you haven't got something connected up correctly in your design. Is it written in verilog or VHDL? Can you post some code?
Cheers,
Alex
Honored Contributor
