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At 13.0 the tools changed quite a bit so I recommend going through the getting started guide again. The first thing to check is that the environment variables point at the 13.0 tools and that you have Stratix V device support installed.
Also in 13.0 you use 'aoc.exe' to compile the kernels now, acl is depricated.
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I can get the .aoco file without any problems using -c flag.
error occurs during the second phase of the compilation.
I do not get any errors/warnings about path variables or device files.