From some example, I know some meaning of suffix by my guessing.
Ex.
"clk" is the clock pin of a D flip-flop.
"q" is the output pin of a D flip-flop.
"~0" to "~*" are the duplicate nets. ...
I'm still not sure what you are looking for. It does seem, though, you are referring to the timing netlist when performing a timing analysis. You can right-click anything and cross-probe to other tools by selecting one of the Locate options. For example, you could cross probe from a timing analyzer report to the RTL Viewer or Technology Map Viewer to see pins on an entity, like a PLL.
I think you're overthinking this a bit. If your goal is to fully constrain your design for timing, all you need (at a minimum) are clock constraints and I/O constraints. Timing exceptions are optional, though usually required.
For a PLL, the command is derive_pll_clocks (not "drive_pll_clocks") and that command alone defines the output clock domains of the PLL, targeting the output pins of the PLL. They're c0 through c5 in the screenshot you've posted, but the nice thing about the tool and the command is that you don't need to know that to constrain the design. If you add the -create_base_clocks option, that constrains the reference clock into the PLL (inclk0). And with that, you're done (for the clocks that is).
If you are missing constraints, rely on the Unconstrained Paths report from the timing analyzer to find the paths the tool considers to be unconstrained and then constrain them. This report lists unconstrained clock and I/O paths.