Dear Nassos,
Regarding the SDRAM controller IP, yes you may follow the user guide in provided link above. Also, here is another user guide which included DDR3 SDRAM controller (with UNIPHY) as well --> https://www.intel.com/content/dam/altera-www/global/ja_JP/pdfs/literature/hb/external-memory/emi_ddr3up_ug.pdf
Feel free to check out this EMIF homepage which centralizes all the information you need to create a memory interface: https://www.intel.com/content/www/us/en/programmable/support/literature/lit-external-memory-interface.html
I can see that you wanted a controller that have Wishbone interface. To be frank, I am not really familiar with this Wishbone interface. Anyway, I did some internal searching and found this page and hope this is helpful --> https://www.intel.com/content/www/us/en/programmable/solutions/partners/partner-profile/eureka-technology-inc-/ip/ahb-to-sdram-controller.html?wapkw=sdram
Let me know if you have any concern.
Thanks
Regards,
Aida