Hi Leo,
It is not aways easy to express yourself in a foreign language. I'm not a native english speaker and neither are you, I assume.
Your post is too cryptic for me. Could you please use some more words to clarify your question? Maybe then I, or other members of this forum, could be of help.
Anyway, I'll give it a shot:
CONF_DONE is an open-drain output. If use a pull-up to 1.8V, the voltage on this pin will remain below 1.8V.
If you use a pull-up to 3.3V, the voltage will rise above 1.8V, probably Vf,diode. I would not recommend this. It could damage your FPGA.
-- Ton