You didn't post all design files, Ton_Ctrl.v is missing. I looked at sync_ctrl and trig_ctrl units and see that you misunderstand both the Verilog syntax for clocksensitive circuits and the hardware features of FPGA.
A flip-flop like pulse_out1 can have only
one clock input. In the below shown always block from sync_ctrl.v, no clock is defined at all.
always @(posedge mclk_in or posedge pclk_in or posedge clk180_in or posedge clk270_in or negedge rst_in)
begin
if (rst_in == 0)
pulse_out1 <= 1'b0;
else if (mclk_in)
begin
if ((trig_in)&&(pw_in) == 1)
pulse_out1 <= 1'b1;
else
pulse_out1 <= 1'b0;
end
else if (pclk_in)
begin
if ((trig_in)&&(pw_in) == 1)
pulse_out1 <= 1'b1;
else
pulse_out1 <= 1'b0;
end
else if (clk180_in)
begin
if ((trig_in)&&(pw_in) == 1)
pulse_out1 <= 1'b1;
else
pulse_out1 <= 1'b0;
end
else if (clk270_in)
begin
if ((trig_in)&&(pw_in) == 1)
pulse_out1 <= 1'b1;
else
pulse_out1 <= 1'b0;
end
else
pulse_out1 <= 1'b0;
end