The timing violation is between the From Node and the To Node, by definition. Those nodes are:
From Node:
ddr3_v20:ddr3_v20_inst
>ddr3_v20_0002:ddr3_v20_inst
>ddr3_v20_s0:s0
>altera_mem_if_sequencer_cpu_cv_synth_cpu_inst:cpu_inst
>W_alu_result[9]~DUPLICATE
To Node:
ddr3_v20:ddr3_v20_inst
>ddr3_v20_0002:ddr3_v20_inst
>ddr3_v20_s0:s0
>sequencer_scc_mgr:sequencer_scc_mgr_inst
>scc_parallel
Launch Clock:
ddr3_v20_inst
>ddr3_v20_inst
>pll0
>pll6~PLL_OUTPUT_COUNTER
>divclk
Latch Clock:
ddr3_v20_inst
>ddr3_v20_inst
>pll0
>pll7~PLL_OUTPUT_COUNTER
>divclk
Both nodes (as well as the PLL which generates the launch and latch clocks) are instantiated within the hierarchy of the memory controller IP (core name is ddr3_v20). I didn't write any of that code.