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The Cyclone V devices provide a 100 Ω, on-chip differential termination option on each differential receiver channel for LVDS standards. On-chip termination saves board space by eliminating the need to add external resistors on the board. You can enable on-chip termination in the Quartus Prime software Assignment Editor.
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By selecting LVDS you will automatically get the termination resistor. However, you can remove this by setting the 'Input Termination' to 'Off', or adding a line to the project's Quartus Settings File (.qsf):
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set_instance_assignment -name INPUT_TERMINATION OFF -to your_input_signal
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Cheers,
Alex