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im using the EP1C3T100C8N, but only actually using 14 IO pins so two banks are unused
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p253 has the statement I recall:
http://www.altera.com/literature/hb/cyc/cyc_c5v1.pdf "Normal operation does not occur until both power supplies are in their
recommended operating range"
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I think i will power the other two banks any way, im not saving any thing by not powering them just a little bit extra routing lol
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That would be my advice.
Cheers,
Dave