Hi,
As I understand it, you have some inquiries related to the CLKUSR pin. For your information, if you are using XCVR in your design, at the board, you should connect the CLKUSR pin to dedicated free-running on-board oscillator with frequency of 100MHz - 125MHz. You would not need to do any instantiation in your design. Without connecting CLKUSR to free-running clock, the transceiver calibration could fail and lead to transceiver malfunction.
Also, it is recommended to use CLKUSR dedicated for transceiver calibration only.
Please let me know if there is any concern. Thank you.