Downloading ELF Process failed (DD2 uniphy on Stratix IV)

I have some good and bad news to shear with u.

The only way to find the exact problem was by loading the files directly to the onchip memory.

first problem "or bug" was that all needed .hex and .mif files where not in the project root directory for some reason so I had to move them. After that I was able to proceed with the with installing the software to the board, then I was getting some memory conflict errors on eclipse. Therefore, I tried to check and update the (.mif)s from processing -> update memory initialization files.

I was getting the following critical warning:

-Critical Warning: Memory depth (10240) in the design file differs from memory depth (16384) in the Memory Initialization File "/project/onchip_memory.hex" -- setting initial value for remaining addresses to 0

I have found that this value is given for some reason (again!!) in onchip_memory.v, so I changed it to 16384 and remove the existing "db" and "incremental_db" directories and compile to create them again and this one was SOLVED.

The bad news is that I cannot get rid of the following warning

- Critical Warning: Memory depth (40) in the design file differs from memory depth (64) in the Memory Initialization File "/project/DDR2uniPHY_p0_AC_ROM.hex" -- truncated remaining initial content value to fit RAM

for this one I don't have any idea what how I can fix this problem. Deleting the overflowing values does not resolve the problem.

any hints!