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Altera_Forum
Honored Contributor
13 years agoThe Cyclone IV Handbook (CYIV-5V1-1.7) p266 Table 11-2, footnote (2) has the comment: "I/O banks 1, 6, 7, and 8 contain configuration pins." (I just happened to have that page of the handbook open due to my responding to another thread).
It may not be JTAG that is causing what you observe, but the undefined state of another configuration pin. Cheers, Dave