That's functionally what I'm trying to do.
The specifics are that I'm trying to avoid it using normal routing. The handbooks talk about register cascading. In Chip Planner, that should show a direct connection between the to FF in an ALM and the bottom FF in an alm.
I just did a quick glance at that first link you sent me. It mentions the cascade chains; I'm specifically trying to get a design that utilizes a cascade chain so I can measure the (likely minute) differences between the different methods Quartus uses to route. Are your modifications synthesizing a cascade chain?